February 11, 2012
| Bio-IT World > Bio-IT Briefs: Nov 11-17


Bio-IT Briefs: Nov 11-17



ParaScale has announced their public cloud storage software, a cloud storage solution for enterprises to create their own public or private storage clouds. The software application runs in user space on any commodity hardware running standard linux and forms a highly scalable self-managing storage cloud with massive capacity and parallel throughput. Read more.

Mitrionics has announced a partnership agreement with Convey Computer Corporation, a pioneer in hybrid-core computing systems, regarding its Mitrion Accelerated Computing Platform and the Convey HC-1 server. Mitrionics will support its Mitrion Virtual Processor and Mitrion Software Development Kit on Convey’s HC-1 hybrid-core computers, and will demonstrate a Mitrion-accelerated Smith-Waterman algorithm running on the HC-1 in the Mitrionics booth # 1006 at SC09.  Read more.

Eli Lilly has snagged AstraZeneca's head of drug discovery as its new research head. Jan Lundberg will join Lilly as early as January 2010. AstraZeneca has said that Lundberg is leaving immediately and will be replaced on an interim basis by Christer Koehler. Read more. 

Tycrid Platform Technologies
is launching the Prometheus Alliance, a limited collaboration alliance focused on developing high performance computing solutions for bioinformatics. The alliance site, www.prometheusalliance.org, will be live soon. Read more.
 

The NCI caBIG has released the Life Sciences Distribution 1.2 bundle of tools, a collection of open-source software tools that facilitates life sciences research by enabling the storage, collection, management, and analysis of a diverse set of biomedical research data types, including biospecimen data, microarray data and imaging data.  In addition, LSD 1.2 includes tools for querying for and aggregating data from across the caGrid. All of the components of the LSD can be plugged into caGrid, and the tools may be downloaded and installed together or individually, depending on the needs of your institution. Read more.

Microchip Biotechnologies has raised $18.1m in Series B financing to fund the commercializaion of the Apollo 100 System, a sample prep system for Sanger DNA cycle sequencing and the development of the Apollo platform for next-gen sequencing and the emerging markets in DNA-based human identification and forensics. Read more.

NCI has released version 1.0 of the caIntegrator2 platform allows researchers to create custom translational study web portals for data query and analysis. These custom portals support the integration of clinical, microarray, and medical imaging data for querying, analysis and visualization, thus enabling multidisciplinary research. This first release of caIntegrator2 supports the integration and analysis of clinical data with expression data and copy number data from caArray (Affymetrix and Agilent platforms) and with images from the National Biomedical Imaging Archive (NBIA). In addition, data can be queried and analyzed via caGrid analytic services (Comparative Marker Selection, Principal Component Analysis and GISTIC at the time of this release) or via GenePattern. Analysis results can then be either viewed at GenePattern or downloaded from the caIntegrator2 portal. Read more.

GenomeQuest has announced a comprehensive and easy-to-use ChIP-Seq workflow solution available immediately as a web cloud service to researchers around the world. The ChIP-Seq method is described in this month’s Nature Methods journal, “Genome-wide measurements of protein-DNA interactions and transcriptomes are increasingly done by deep DNA sequencing methods (ChIP-Seq and RNA-Seq).”  Reporting on tools, it continues, “Whereas early adopters necessarily developed their own custom computer code to analyze the first ChIP-Seq and RNA-Seq datasets, a new generation of more sophisticated algorithms and software tools are emerging to assist in the analysis phase of these projects.” Read more.

BioTrove is forming a wholly owned subsidiary named BIOCIUS Life Sciences to hold the assets of the RapidFire Business Unit. Upon completion of Life Technologies proposed acquisition of BioTrove, also announced today, BIOCIUS Life Sciences will be spun-out as an independent operating company. Read more.

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White Papers & Special Reports

sgi whp 2
Managing the Modern Genomics Data Flood
Sponsored by SGI

Managing and storing the perfect storm of multi-disciplined data pouring from next generation sequencers and other omics instruments is a central challenge in life sciences. Discover in this paper how the SGI ArcFiniti storage solution, optimized for unstructured genomics and life sciences data can: 

  • Reduce costs, proactively protect data integrity, and deliver the high performance I/O required for genomics data processing and analysis.  
  • Effectively manage capacities from 156TB to 1.4PB as a disk based, integrated hardware and software platform 


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Turning Genomics Data into Practical Insight
Sponsored by SGI

With worldwide sequencing capacity approaching 13 quadrillion DNA bases annually turning genomics data into knowledge is a true computational challenge. Read this paper and learn how the SGI UV coherent shared memory platform can:  

  • Speed results time while cost competitively tackling the most difficult computational problems across all omics disciplines. 
  • Push performance by scaling to extraordinary levels, up to 256 sockets (2,560 cores, 4,096 threads) per single system (one OS image). 

Provide support for up to 16TB of coherent shared memory in a single system image enabling extreme efficiency across a wide range of compute demands. 



accerlys-logo_2012_wh
New Complimentary Market Survey…
Collaborations and Communications Within Drug Discovery Research
Sponsored by Accelrys
This survey was conducted by the Cambridge Healthtech Media Group in January, 2012. It was sponsored by Accelrys related to their HEOS initiative to gather valid information around externalizing collaborative research while improving communications in the cloud. With 310 qualified industry respondents the survey findings reveal useful usage and trends patterns.  An insightful follow-on discussion and webinar related to this survey, and the HEOS by Scynexis SaaS portal is also available on the Bio-IT World website for complementary viewing.
 


Job Openings

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Scientific Software Engineer
Boston MA
$70,000 to $95,000
 
Apply at http://jobs.tessella.com   

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Early Access Collaborations ManagersClick here to find out more and apply   

Oxford Nanopore's GridION technology, VP, Sales and Marketing Click to  Apply  

For reprints and/or copyright permission, please contact  Tim McLucas, (781) 972-1342, tmclucas@healthtech.com .