Prioritizing Compounds, Rationally

By BIO-IT World

June 17, 2004 | According to J&J's Jan Hoflack, Vice President of medicinal chemistry and enabling technologies, high-throughput screening is not, strictly speaking, a problem at all. Hoflack, who is based in Beerse, Belgium, says a larger issue is all the attendant information around each candidate molecule that emerges out of a screening campaign.

"For each molecule, you can generate thousands of molecular descriptors," Hoflack says. Computer models of ADME properties are part of the ABCD suite. But once again, it is the way that the data can be quickly scanned by sophisticated users that is the software's real strength.

As is the case throughout the industry, the in silico or actual synthesis of large numbers of compounds is child's play. "We could actually imagine a billion compounds to be made," Hoflack says, "and anticipate how well they would do with all of these important parameters, and in the end select the 300, 400, 500 we feel would be most suitable."

These winnowed molecules can easily be lumped into chemical families, Hoflack says. But further prioritization is not always rigorous. "In the past," he says, "we probably would have selected those families we were most familiar with. It was a subjective selection. Today, we try to generate lots of information on each of these families and pick the ones we think are most likely to end up with a drug. We try to use much more information to make those selections."

"Where everybody is struggling is at the level of data mining, converting data into information, and into knowledge," Hoflack explains. "Where we are making our major leap is that we are building a system that can not only gather that information, but also give us the tools to interpret it. It's all about ADME. It's all about tox. All of these things we try to understand early on."

M.U.

Back to How to Spell Discovery 

White Papers & Special Reports

thomson reuters image
Biomarkers: An Indispensible Addition to the Drug Development Toolkit
Examining the Potential of Biomarkers
Sponsored by Thomson Reuters

Biomarkers are becoming an essential part of clinical development. In this white paper, Thomson Reuters provides insight from experts in industry and academia, and explores the role of biomarkers as evaluative tools in improving clinical research and the challenges this presents.

Discover the potential of biomarkers to:

  • Improve decision making
  • Accelerate drug development
  • Reduce development costs


BlueArc_Scientific Data
Scientific Data Lifecycle Management: Preparing for Storage in an Uncertain Future
Sponsored by BlueArc

Managing vast and overwhelming streams of gene sequencing data today requires ultra-high performance systems and processes. With continued rapid advancement and improvements in gene sequencing, expect tomorrow’s instruments to output quantities of genomic information that will dwarf current levels. Help your organization maintain data control and prepare for the future of sequencing through this informative paper that discusses:

  • The information technology challenges of gene sequencing
  • “Intelligent” methods for data management and customization
  • System survival tips... Deciding what data to keep or delete
  • New tools to keep scientists ahead of impending data torrents


SAS Managed image
Managed Innovation, Assured Compliance
Developing, executing and managing the transformation, analysis and submission of clinical research data with SAS® Drug Development
Sponsored by SAS
Get better products to market faster. Download this white paper to discover the top ten challenges facing life science executives and how to overcome them. See how SAS Drug Development transforms clinical data into true innovation.


Life Science Webcasts & Podcasts

Presented by Trade Commission of Spain

Spain Biotech: An Engine for Economic Change 

TCS podcastDiscover how Spain is focusing on biotechnology to be an engine for economic change through gradual internationalization, development and technology transfer.

Regional governments are actively investing in public and private biology research and promoting the creation of knowledge-based companies. Spain’s human capital combined with aggressive investment in biotech research and infrastructure has led to the creation of bio-clusters.

Today, there are nearly 700 Spanish companies engaged in biotechnology, with almost 50 percent growth in funding devoted to research. In fact, spending on internal R & D in biotechnology has grown 46 percent and is close to 300 million Euros.

Access the podcast 

 



More Podcasts

Job Openings

saic_logo

MANAGER, SCIENTIFIC COMPUTING & PROGRAMMING
(Bioinformatics Manager)
SAIC-Frederick, Inc has an exciting opportunity for a Manager, Scientific Computing & Programming - Core Genoytyping Facility in Gaithersburg, Maryland.  In this role, you will lead the Bioinformatics & Analysis Group.
Master’s or equivalent required.  PhD preferred. Six years experience in development of scientific programs in high-performance computing environment including five years supporting scientific research in computational chemistry, biology, or genetics, & two years supervisory experience.  View complete job posting & apply: www.saic-frederick.com. Position #146945.

For reprints and/or copyright permission, please contact The YGS Group, 1808 Colonial Village Lane, Lancaster, PA;

(717) 399-1900 ext. 125, or via email to Ashley.Zander@theYGSgroup.com.