February 11, 2012
| Bio-IT World > Decoding a Mystery


Decoding a Mystery



By Kevin Davies

Nov. 12, 2008 | It is difficult to watch a company with the innovation and imagination of Iceland’s deCODE Genetics struggle to sustain its business given its role at the vanguard of genomic research and medicine. However, last month deCODE retained the Stanford Group to conduct a strategic review of its businesses, which encompass gene discovery, drug development, and molecular diagnostics, in hopes of charting a course to short-term survival and long-term success.

In recent years, but especially since the 2007 boon in identifying gene associations for common diseases, CEO Kari Stefansson and colleagues have contributed more robust discoveries than any other organization, which has spurred the launch of a series of diagnostic kits. But if this decade has taught us anything, it is that translating gene discoveries into drugs is no sure thing. deCODE has managed to push three promising cardiovascular drugs into the clinic, but the most expensive parts of those trials lie ahead. With depleted funds, the current economic mess—Stefansson faults deCODE’s American investments more than his own country’s plight—brings additional problems.

Kari Stefansson deCODE
deCODE CEO Kari Stefansson
In a typically candid admission to me shortly before the extent of Iceland’s financial woes became known, Stefansson acknowledged the mounting business pressures facing his company. “You can argue that our company was founded about six years too early, because the technology to systematically isolate disease genes wasn’t available really until a long time [later],” he said.

“We’ve performed very badly in telling out story in the investment community,” he continued. “When you’ve been running a company like this for a considerable number of years before the technology is able to deliver, you end up collecting legacy, you collect debt. We have a convertible bond debt of $225 million, which is basically the cost of running the company…, I’m not happy with it, but am I deeply concerned? No. The sales of our diagnostics are picking up. The company has a very realistic business plan that shows we’re going to become profitable in a very short period of time. The markets and the rest of the world will appreciate it pretty soon.”

Although Stefansson asserted that his company was “leading the field of human genetics,” he said unnamed critics were “trying to undermine our credibility,” for example by “insisting that our diagnostic tests are not measuring any real risk.” The company’s latest test for breast cancer is no exception—few if any of the seven markers in that panel offer a biological rationale for assessing cancer risk. But deCODE insists that its markers are the fruit of replicated studies on some 100,000 women and are capable of identifying several-fold increases in a woman’s cancer.

Bio-IT World’s New Recruit

Alert readers will notice a new byline appearing in this issue. We are delighted to welcome Alissa Poh as the latest member of Bio-IT World’s editorial team. Alissa will be editing PharmaWeek, one of our most avidly read eNewsletters. Alissa hails from Malaysia and studied biochemistry in the U.K. before moving to the U.S., continuing her studies at Dartmouth College and finally the prestigious University of California Santa Cruz science writing program. She has penned some compelling stories around pharma strategy and innovation, two of which are included in this issue (see pages 15, 22). You’ll be seeing her byline much more in these pages and online in the months to come.

Even more alert readers will note that this issue takes us through to the end of 2008. In 2009, we will publish bimonthly issues of Bio-IT World while expanding our ongoing coverage of the bio-IT industry through a range of web and online media. We look forward to seeing you in a prosperous New Year!

November marks the first anniversary of the launch of the personal genomics service deCODEme. Stefansson said his original business proposal “was always to use genetics for preventative health care” (see “Keeping Score of your Sequence,” page 16). Stefansson believes that whole-genome sequencing will replace genotyping within the next 2-5 years. He is proud of a new deCODE method to calculate long haplotypes in the Icelandic genome to aid in the discovery of rare sequence variants. “We need to sequence about 2,000 Icelanders to be able to impute the sequence of the entire nation, because we have the genealogy of thousands of people,” he said.

We’ve had some interesting jousts with Stefansson, who keynoted the 2006 Bio-IT World Expo, over the years. Hopefully, deCODE’s reorganization, scheduled to be announced in November, will do the trick.

 

__________________________________________________

This article appeared in Bio-IT World Magazine.

Subscriptions are free for qualifying individuals.  Apply Today.

 

 

 

 

Click here to login and leave a comment.  

0 Comments

Add Comment

Text Only 2000 character limit

Page 1 of 1



White Papers & Special Reports

sgi whp 2
Managing the Modern Genomics Data Flood
Sponsored by SGI

Managing and storing the perfect storm of multi-disciplined data pouring from next generation sequencers and other omics instruments is a central challenge in life sciences. Discover in this paper how the SGI ArcFiniti storage solution, optimized for unstructured genomics and life sciences data can: 

  • Reduce costs, proactively protect data integrity, and deliver the high performance I/O required for genomics data processing and analysis.  
  • Effectively manage capacities from 156TB to 1.4PB as a disk based, integrated hardware and software platform 


sgi - whp 1
Turning Genomics Data into Practical Insight
Sponsored by SGI

With worldwide sequencing capacity approaching 13 quadrillion DNA bases annually turning genomics data into knowledge is a true computational challenge. Read this paper and learn how the SGI UV coherent shared memory platform can:  

  • Speed results time while cost competitively tackling the most difficult computational problems across all omics disciplines. 
  • Push performance by scaling to extraordinary levels, up to 256 sockets (2,560 cores, 4,096 threads) per single system (one OS image). 

Provide support for up to 16TB of coherent shared memory in a single system image enabling extreme efficiency across a wide range of compute demands. 



accerlys-logo_2012_wh
New Complimentary Market Survey…
Collaborations and Communications Within Drug Discovery Research
Sponsored by Accelrys
This survey was conducted by the Cambridge Healthtech Media Group in January, 2012. It was sponsored by Accelrys related to their HEOS initiative to gather valid information around externalizing collaborative research while improving communications in the cloud. With 310 qualified industry respondents the survey findings reveal useful usage and trends patterns.  An insightful follow-on discussion and webinar related to this survey, and the HEOS by Scynexis SaaS portal is also available on the Bio-IT World website for complementary viewing.
 


Job Openings

tessella logo 
Scientific Software Engineer
Boston MA
$70,000 to $95,000
 
Apply at http://jobs.tessella.com   

oxford nanopore logo 


Early Access Collaborations ManagersClick here to find out more and apply   

Oxford Nanopore's GridION technology, VP, Sales and Marketing Click to  Apply  

For reprints and/or copyright permission, please contact  Tim McLucas, (781) 972-1342, tmclucas@healthtech.com .