Transforming Drug Development



January 20, 2010 | Special Report | As we embark on a new year and a new decade, there’s not much doubt what biotech and pharma companies are wishing for: the ability to more accurately and expeditiously develop safe new drugs, ideally tailored (through companion diagnostics or patient stratification) to responsive segments of the population. In this issue of Bio•IT World, we present a collection of reports and interviews that showcase a variety of projects, people, and approaches that might bear fruit.

The cover features Andrew Hopkins, a chemist and informaticist who left his high-profile position at Pfizer to join an exciting new research center in the appropriately-named City of Discovery, at the University of Dundee in Scotland. Hopkins, best known for his work on the druggable genome, shares ideas for improving the efficiency of drug development by applying “a plethora of informatics methods to the concept of information-driven drug discovery” [see page 27].

Another organization touting the central role of informatics is Centocor, the research arm of Johnson & Johnson, where Eric Perakslis and colleagues have designed and deployed TranSMART, a rich knowledgebase developed with a company called Recombinant, which is winning admirers within the company and potential partners beyond [see page 33].

The end goal of all this technology is to identify drugs faster, cheaper, and better, but sometimes the real world cruelly intervenes. The fate of a promising heart drug called DG051 is in limbo following the decision of Iceland’s deCODE Genetics to file for bankruptcy, but the story of its rapid development and successful entry into the clinic is a valuable one, not least for showcasing the gene-to-structure capabilities of Seattle’s Emerald BioStructures [see page 24].

Avila Therapeutics is a Boston-based pharma that is placing a huge bet on covalent, irreversible inhibitors, which it sees as the key to new therapeutics. The improved specificity and pharmacological properties afforded by covalent drugs could speed passage through the clinic. Avila has two compounds on course to enter the clinic later this year [page 36].

In India, the Open Source Drug Development initiative is marshalling hundreds of researchers to help in the battle to develop drugs for infectious diseases such as tuberculosis, where the medical need far outstrips the perceived commercial opportunity [see page 32]. Another promising collaborative endeavor is taking place in the Arizona desert (OK, Tucson), where the Critical Path Institute is starting to earn results in biomarker validation and other areas, working with pharma partners and the Food and Drug Administration [see page 35]. Elsewhere in this issue [see page 5], we look at The Pistoia Alliance, a promising pharma-initiated consortium for research informatics and pre-competitive information sharing.

We round out this report with pieces on Accelrys [see page 26], which is seeing strong interest in its software service capabilities, particularly in the area of biologics. And Ryan DeBeasi reports from CHI’s Discovery on Target [see page 38]. Elsewhere in this issue, the Russell Transcript [see page 46] looks at Tessella, the British-based informatics consultancy.

Like the aforementioned, we hope that some of these initiatives and approaches do indeed begin to transform drug development in 2010, and we look forward to highlighting further examples throughout the year.

Kevin Davies
Allison Proffitt
John Russell


This article also appeared in the January-February 2010 issue of Bio-IT World Magazine.
Subscriptions are free for qualifying individuals. Apply today.


Click here to login and leave a comment.  

0 Comments

Add Comment

Text Only 2000 character limit

Page 1 of 1



White Papers & Special Reports

sgi whp 2
Managing the Modern Genomics Data Flood
Sponsored by SGI

Managing and storing the perfect storm of multi-disciplined data pouring from next generation sequencers and other omics instruments is a central challenge in life sciences. Discover in this paper how the SGI ArcFiniti storage solution, optimized for unstructured genomics and life sciences data can: 

  • Reduce costs, proactively protect data integrity, and deliver the high performance I/O required for genomics data processing and analysis.  
  • Effectively manage capacities from 156TB to 1.4PB as a disk based, integrated hardware and software platform 


sgi - whp 1
Turning Genomics Data into Practical Insight
Sponsored by SGI

With worldwide sequencing capacity approaching 13 quadrillion DNA bases annually turning genomics data into knowledge is a true computational challenge. Read this paper and learn how the SGI UV coherent shared memory platform can:  

  • Speed results time while cost competitively tackling the most difficult computational problems across all omics disciplines. 
  • Push performance by scaling to extraordinary levels, up to 256 sockets (2,560 cores, 4,096 threads) per single system (one OS image). 

Provide support for up to 16TB of coherent shared memory in a single system image enabling extreme efficiency across a wide range of compute demands. 



accerlys-logo_2012_wh
New Complimentary Market Survey…
Collaborations and Communications Within Drug Discovery Research
Sponsored by Accelrys
This survey was conducted by the Cambridge Healthtech Media Group in January, 2012. It was sponsored by Accelrys related to their HEOS initiative to gather valid information around externalizing collaborative research while improving communications in the cloud. With 310 qualified industry respondents the survey findings reveal useful usage and trends patterns.  An insightful follow-on discussion and webinar related to this survey, and the HEOS by Scynexis SaaS portal is also available on the Bio-IT World website for complementary viewing.
 


Job Openings

tessella logo 
Scientific Software Engineer
Boston MA
$70,000 to $95,000
 
Apply at http://jobs.tessella.com   

oxford nanopore logo 


Early Access Collaborations ManagersClick here to find out more and apply   

Oxford Nanopore's GridION technology, VP, Sales and Marketing Click to  Apply  

For reprints and/or copyright permission, please contact  Tim McLucas, (781) 972-1342, tmclucas@healthtech.com .