IT and Informatics Weekly New Product Roundup



This week's roundup focuses on product news from the SC05 conference, held in Seattle last week. Most announcements are for high performance computing systems and software to run applications on HPC systems.

Microsoft announced the availability of the beta 2 version of Windows Compute Cluster 2003. The software comes on two CDs -- one that contains Windows Server 2003 Compute Cluster Edition and a second CD with the Microsoft Compute Cluster Pack. The first CD includes the basic operating system, the second offers a job scheduler, MPI features, and other tools to run jobs on an HPC cluster. Microsoft broke the offering up in this way so that organizations that use third party schedulers or MPI technology may continue to do so. 

Microsoft will rely on partners and independent software vendors (ISVs) to bring Windows Compute Cluster 2003 to particular markets such as the life sciences market. To that end, partners in the Microsoft pavilion at SC05 included several vendors familiar to the life science community including Accelrys, the BioTeam, MathWorks, Platform, Wolfram Research. Microsoft also included the parallel molecular modeling dynamics code NAMD in its partners pavilion at SC05.

Penguin Computing unveiled Penguin Application-Ready Cluster Portfolio, a line of workgroup or personal clusters that combine hardware and pre-installed software. Essentially, the systems are turn-key HPC clusters designed for researchers with little or no IT support. The entire portfolio of products is available with single- and dual-core AMD Operteron processors or Intel EM64T processors

The Application-Ready Cluster Portfolio includes three product lines. The Penguin Portable Clusters include 6 to 24 CPUs and delivers up to 200 GigaFLOPS (200 billion operations per second) of processing power. The Penguin Performance Clusters can scale from 32 to 256 nodes and delivers up to three-quarters of a TeraFLOPS (trillion operations per second) of processing power. And the Penguin High Density Clusters support up to 240 CPUs and delivers up to 2 TeraFLOPS of processing power.

Linux Networx announced the LS Series, a family of Linux Supersystems. The series includes two product lines: the LS-1 and LS/X. Linux Networx says all the systems in the LS Series combine optimized performance and reduced total cost of ownership.

The LS-1 Supersystems are pre-configured Linux clusters aimed at a wide range of scientific computational and simulation applications and they can be scaled from modest to high-end performance. The LS/X Supersystems are aimed at the high-end, which Linux Networx calls extreme performance. Linux Networx offers LS/X systems that deliver up to 100 TeraFLOPS of processing power.

Wolfram Research announced Mathematica Personal Grid Edition, software that combines the computational features of its flagship data analysis and visualization software Mathematica with high-level parallel language extensions that allow the application to be ported to run on four computing cores.

Specifically, Personal Grid Edition combines four Mathematica kernels, a Mathematica front-end, and a parallel computing toolkit. The software allows a researcher to quickly modify applications to run on four systems or cores producing up to 300 percent increase in performance. Wolfram says the applications can also be run unchanged on grids or clusters using gridMathematica.

SGI announced the SGI Altix 4000, a new platform in its Altix computing line. The Altix 4000 uses blade components, Intel Itanium2 processors, and SGI’s NUMAflex shared memory architecture. The first model in the line, the Altix 4700, supports up to 512 processors and as much as 128 TB of shared memory. The system comes with a choice of Novell SUSE Linux Enterprise Server 9 or Red Hat Enterprise Linux Advanced Server 4 operating systems.

MathWorks announced Distributed Computing Toolbox 2, a new version of its programming tool for developing distributed computing applications. Enhancements in this release include support for third-party compute job schedulers and new inter-process communication features for distributing and executing parallel algorithms in a cluster of computers using MATLAB.

Interactive Supercomputing (ISC) announced ISC Star-P, software that allows scientists to write algorithms and create models on their desktop and then run them instantly and interactively on SGI Altix servers. Specifically, scientists can work with familiar mathematical software packages such as Mathworks MATLAB to develop data modeling and analysis routines as they normally would. Once done, the Star-P software takes the desktop application and automatically parallelizes the code so that it can run on any multi-processor system (such as the Altix) or parallel cluster. Star-P will ship by year's end.

Rackable Systems announced the C5100-SMP Server and the C2002 High Efficiency Series product line. The C5100-SMP is a 5U, 8 Intel Xeon processor server with 32 GB of memory. Rackable Systems touts it as an x86-based alternative to RISC-based SMP servers. The C5100-SMP is available now with a list price of $69,000. Dual-core and 16-processor systems are planned. The C2002 uses DC power and a number of design features to offer low power consumption and a thermally efficient system. The C2002 systems use dual-core AMD and Intel processors and are intended for use in high-density data centers. 

Briefly…

Liquid Computing, a developer of scalable HPC servers, announced that Europe’s Council for the Central Laboratory of Research Councils will participate in the beta testing of Liquid’s Interconnect Driven Server (dubbed LiquidIQ)…

Appro showed its new AMD-based XtremeBlade systems, which were announced the week before the show.

(Note: Next week’s product roundup will be a holiday special featuring gifts and gadgets for scientists and IT professionals and their staffs.)

Related Stories:

IT and Informatics Weekly New Product Roundup (wee of Nov. 7 to 11)

IT and Informatics Weekly New Product Roundup (week of Oct. 31 to Nov. 4)

IT and Informatics Weekly New Product Roundup (week of Oct. 24 to 28)

IT and Informatics Weekly New Product Roundup (week of Oct. 17 to 21)


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White Papers & Special Reports

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Managing the Modern Genomics Data Flood
Sponsored by SGI

Managing and storing the perfect storm of multi-disciplined data pouring from next generation sequencers and other omics instruments is a central challenge in life sciences. Discover in this paper how the SGI ArcFiniti storage solution, optimized for unstructured genomics and life sciences data can: 

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New Complimentary Market Survey…
Collaborations and Communications Within Drug Discovery Research
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This survey was conducted by the Cambridge Healthtech Media Group in January, 2012. It was sponsored by Accelrys related to their HEOS initiative to gather valid information around externalizing collaborative research while improving communications in the cloud. With 310 qualified industry respondents the survey findings reveal useful usage and trends patterns.  An insightful follow-on discussion and webinar related to this survey, and the HEOS by Scynexis SaaS portal is also available on the Bio-IT World website for complementary viewing.
 


Job Openings

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Tessella delivers software engineering and consulting services to leading pharmaceutical and biotech companies. We are recruiting Software Engineersto work with skilled bioinformaticians and scientists to identify business needs and recommend and develop technical solutions. Applicants require BS, MS or PhD in bioinformatics, biology or chemistry and 2+ years of software development in either: Java, C#, C++, C or VB.NET. 

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 Early Access Collaborations Managers
Oxford Nanopore Technologies is developing a novel technology, GridIONTM for the direct, electronic analysis of DNA/RNA and other analytes.  As the system approaches the market, we are building a team of technically knowledgeable, highly motivated candidates with excellent customer service and facilitation skills to join our company as Collaboration Managers.  This is a unique opportunity to work with world-leading genomics customers throughout the early adoption phase of a new generation of DNA sequencing technology.. This is a facilitative, enabling role with responsibility for managing technology development collaborations with key customers at leading genomics institutions.  It will include long term management of the collaboration plan and milestones and associated meetings and documentation. Click here to find out more and apply   

Oxford Nanopore's GridION technology, VP, Sales and Marketing Oxford Nanopore Technologies is a fast-moving technology company that is developing a novel electronic molecular analysis technology. The technology is adaptable for the analysis of DNA/RNA, proteins, chemicals and other molecules.  It is therefore suitable for use in a variety of markets including scientific research and clinical applications.  As the technology approaches the market, Oxford Nanopore is seeking a visionary VP of sales and marketing to join the senior team.  The candidate will embrace the opportunities afforded by entering the market with a truly disruptive technology that has the potential to expand the number of users and the variety of applications in each target market.  This is a rare opportunity to influence the commercial strategy at an early phase of its commercial lifetime, in a well funded company.  Oxford Nanopore welcomes applications from candidates with a track record of high-level strategic commercial  leadership, who wish to apply a fresh approach to existing markets.  Experience in Life Sciences/DNA sequencing is central to this role, however we will consider your application if you have experience of disruptive technologies in other related industries.  We are particularly interested in candidates with strong expertise in the use of digital technologies for sales and marketing of scientific/technical products.  Click to  Apply  


 

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