February 8, 2012
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Short News & Analysis



January 22, 2009 | GenoLogics Wins JBEI Deal 
The Joint BioEnergy Institute (JBEI) of U.S. DOE will deploy GenoLogics lab and integrated data management solution for multiple sciences. JBEI is a scientific partnership that is led by Lawrence Berkeley National Laboratory and includes the Sandia National Laboratories, the University of California campuses of Berkeley and Davis, the Carnegie Institution for Science and the Lawrence Livermore National Laboratory. JBEI’s primary scientific mission is to advance the development of the next generation of biofuels – liquid fuels derived from the solar energy stored in plant biomass.
 
“The GenoLogics solution has the capabilities we require to integrate data from different sciences and technologies, while tracking samples across multiple experiments and projects all in a single lab and data management system,” said Dr. Paul Adams, JBEI’s Vice President of Technology. “The GenoLogics system will also allow us to easily generate reports showing data from multiple sciences and automate our data pipelining for integrated analysis.” Separately, GenoLogics announced Wellcome Trust is deploying its Geneus lab and data management solution for genomics, including integrations to next generation sequencing platforms. Read releases.

Euro Science Foundation Lays Out Sys Bio Plan
Crucial breakthroughs in the treatment of many common diseases such as diabetes and Parkinson's could be achieved by harnessing a powerful scientific approach called systems biology, according to a Science Policy Briefing released by the European Science Foundation. The new policy calls for a coordinated strategy towards systems biology across Europe. The scientists have pinpointed several key disease areas that are ripe for a systems biology approach. More information.

Test Handles Paraffin-Embedded Specimens
Pathwork Diagnostics launched a version of its Tissue of Origin Test that can analyze formalin-fixed, paraffin-embedded (FFPE) tissue specimens. This molecular diagnostic test, which aids in the diagnosis of tumors with uncertain origins, is now available as a service through the CLIA-certified Pathwork Diagnostics Laboratory. “The capability to work with FFPE specimens will enable our test to be more broadly utilized by oncologists and pathologists,” said Deborah J. Neff, President and Chief Executive Officer of Pathwork Diagnostics. “Due to the RNA degradation that occurs in FFPE specimens, generating robust and reproducible data for many genes simultaneously was a significant challenge. Maintaining the high level of robust and reliable performance for the FFPE version of the test was an outstanding technical accomplishment by the company.” Read release.

InforSense Founder Takes New Role
Yike Guo, InforSense founder, will transition from CEO to become Chief Technology Officer and Head of Innovation, says the company. InforSense also announced it secured $5 million in funding commitment from its existing investors. This commitment follows consecutive record revenue quarters resulting in year-over-year growth of approximately 30% says the company. David Bennett, who joined InforSense in January 2008 as Executive Vice President Worldwide Sales, was named CEO. Read release.

New Genotype Offering from Illumina
Illumina launched the Infinium HD (High Density) iSelect Custom Genotyping solution. Researchers now have the flexibility to screen SNPs ranging from 3,000 to 200,000 in focused genotyping studies for both human and non-human species. The first commercially available products made with the Infinium HD iSelect technology include the OvineSNP50 and PorcineSNP60 BeadChips. These 12-sample SNP genotyping products add to Illumina's expanding agriculture portfolio, helping researchers detect genome-wide genetic variation in any breed of pig or sheep. Read release. Separately, Illumina announced today that it has introduced the Illumina CSPro Program for Sequencing. This new extension to the program allows organizations with the Illumina Genome Analyzer to become certified in order to provide a range of sequencing-based genetic analysis services. Read release. 

Is Warfarin Genotype Testing Cost-effective?
A recent study in Annals of Internal Medicine -- Cost-Effectiveness of Using Pharmacogenetic Information in Warfarin Dosing for Patients With Nonvalvular Atrial Fibrillation –  reports “genotype-guided dosing resulted in better outcomes, but at a relatively high cost.” Read report.
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This article first appeared in Bio-IT World’s Predictive Biomedicine newsletter. Click here for a free subscription.

 


 

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White Papers & Special Reports

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Managing the Modern Genomics Data Flood
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Managing and storing the perfect storm of multi-disciplined data pouring from next generation sequencers and other omics instruments is a central challenge in life sciences. Discover in this paper how the SGI ArcFiniti storage solution, optimized for unstructured genomics and life sciences data can: 

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New Complimentary Market Survey…
Collaborations and Communications Within Drug Discovery Research
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This survey was conducted by the Cambridge Healthtech Media Group in January, 2012. It was sponsored by Accelrys related to their HEOS initiative to gather valid information around externalizing collaborative research while improving communications in the cloud. With 310 qualified industry respondents the survey findings reveal useful usage and trends patterns.  An insightful follow-on discussion and webinar related to this survey, and the HEOS by Scynexis SaaS portal is also available on the Bio-IT World website for complementary viewing.
 


Job Openings

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Tessella delivers software engineering and consulting services to leading pharmaceutical and biotech companies. We are recruiting Software Engineersto work with skilled bioinformaticians and scientists to identify business needs and recommend and develop technical solutions. Applicants require BS, MS or PhD in bioinformatics, biology or chemistry and 2+ years of software development in either: Java, C#, C++, C or VB.NET. 

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 Early Access Collaborations Managers
Oxford Nanopore Technologies is developing a novel technology, GridIONTM for the direct, electronic analysis of DNA/RNA and other analytes.  As the system approaches the market, we are building a team of technically knowledgeable, highly motivated candidates with excellent customer service and facilitation skills to join our company as Collaboration Managers.  This is a unique opportunity to work with world-leading genomics customers throughout the early adoption phase of a new generation of DNA sequencing technology.. This is a facilitative, enabling role with responsibility for managing technology development collaborations with key customers at leading genomics institutions.  It will include long term management of the collaboration plan and milestones and associated meetings and documentation. Click here to find out more and apply   

Oxford Nanopore's GridION technology, VP, Sales and Marketing Oxford Nanopore Technologies is a fast-moving technology company that is developing a novel electronic molecular analysis technology. The technology is adaptable for the analysis of DNA/RNA, proteins, chemicals and other molecules.  It is therefore suitable for use in a variety of markets including scientific research and clinical applications.  As the technology approaches the market, Oxford Nanopore is seeking a visionary VP of sales and marketing to join the senior team.  The candidate will embrace the opportunities afforded by entering the market with a truly disruptive technology that has the potential to expand the number of users and the variety of applications in each target market.  This is a rare opportunity to influence the commercial strategy at an early phase of its commercial lifetime, in a well funded company.  Oxford Nanopore welcomes applications from candidates with a track record of high-level strategic commercial  leadership, who wish to apply a fresh approach to existing markets.  Experience in Life Sciences/DNA sequencing is central to this role, however we will consider your application if you have experience of disruptive technologies in other related industries.  We are particularly interested in candidates with strong expertise in the use of digital technologies for sales and marketing of scientific/technical products.  Click to  Apply  


 

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